Last updated: 2023-11-20
Checks: 6 1
Knit directory: multigroup_ctwas_analysis/
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num_weights tissue number of weights
1 Brain 2162
4 Muscle 1816
2 Heart 1311
3 Lung 537results[["Brain"]][["group_pve"]] SNP gene
0.072123769 0.001889188 results[["Brain"]][["top_genes"]] id susie_pip
741978 chr16:72071856-72074742 0.9999470
135322 chr3:58283315-58283762 0.6006171
309826 chr6:116015801-116017915 0.3204765
157907 chr3:147407976-147408874 0.3122572
157908 chr3:147409417-147411823 0.3122572results[["Heart"]][["group_pve"]] SNP gene
0.073241867 0.000436393 results[["Heart"]][["top_genes"]] id susie_pip
334207 chr7:26100872-26102734 0.7932238
746947 chr17:68980686-68981840 0.7710315
740177 chr10:112926383-112927551 0.7383973
543457 chr12:109522351-109523055 0.7155884
30017 chr1:119000376-119002019 0.6745865results[["Lung"]][["group_pve"]] SNP gene
7.390805e-02 9.472071e-06 results[["Lung"]][["top_genes"]] id susie_pip
447764 chr10:24921164-24922036 0.31693549
333951 chr7:26100738-26102223 0.12422832
631984 chr16:31032278-31034519 0.09342714
460267 chr10:70507829-70508342 0.08411602
629524 chr16:19183109-19183443 0.07480633results[["Muscle"]][["group_pve"]] SNP gene
0.0686360012 0.0005765478 results[["Muscle"]][["top_genes"]] id susie_pip
746686 chr19:35067306-35069267 0.8352666
26873 chr1:109273897-109275636 0.7906101
26874 chr1:109275742-109276143 0.7906101
309175 chr6:116054551-116055711 0.6318865
55489 chr1:246781213-246783157 0.5820124
sessionInfo()R version 4.1.0 (2021-05-18)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)
Matrix products: default
BLAS/LAPACK: /software/openblas-0.3.13-el7-x86_64/lib/libopenblas_haswellp-r0.3.13.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] cowplot_1.1.1 ggplot2_3.4.0 RSQLite_2.2.19 data.table_1.14.6
[5] workflowr_1.7.0
loaded via a namespace (and not attached):
[1] Rcpp_1.0.9 lattice_0.20-44 getPass_0.2-2 ps_1.7.2
[5] assertthat_0.2.1 rprojroot_2.0.3 digest_0.6.31 foreach_1.5.2
[9] utf8_1.2.2 R6_2.5.1 evaluate_0.19 httr_1.4.4
[13] pillar_1.8.1 rlang_1.1.1 rstudioapi_0.14 whisker_0.4.1
[17] callr_3.7.3 jquerylib_0.1.4 blob_1.2.3 Matrix_1.3-3
[21] rmarkdown_2.19 labeling_0.4.2 stringr_1.5.0 bit_4.0.5
[25] munsell_0.5.0 compiler_4.1.0 httpuv_1.6.7 xfun_0.35
[29] pkgconfig_2.0.3 htmltools_0.5.4 tidyselect_1.2.0 tibble_3.1.8
[33] logging_0.10-108 codetools_0.2-18 ctwas_0.1.40 fansi_1.0.3
[37] dplyr_1.0.10 withr_2.5.0 later_1.3.0 grid_4.1.0
[41] jsonlite_1.8.4 gtable_0.3.1 lifecycle_1.0.3 DBI_1.1.3
[45] git2r_0.30.1 magrittr_2.0.3 scales_1.2.1 cli_3.6.1
[49] stringi_1.7.8 cachem_1.0.6 farver_2.1.0 fs_1.5.2
[53] promises_1.2.0.1 pgenlibr_0.3.2 bslib_0.4.1 vctrs_0.6.3
[57] generics_0.1.3 iterators_1.0.14 tools_4.1.0 bit64_4.0.5
[61] glue_1.6.2 processx_3.8.0 fastmap_1.1.0 yaml_2.3.6
[65] colorspace_2.0-3 memoise_2.0.1 knitr_1.41 sass_0.4.4