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Knit directory: multigroup_ctwas_analysis/
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sessionInfo()R version 4.2.0 (2022-04-22)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)
Matrix products: default
BLAS/LAPACK: /software/openblas-0.3.13-el7-x86_64/lib/libopenblas_haswellp-r0.3.13.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] ctwas_0.5.4.9000 workflowr_1.7.0
loaded via a namespace (and not attached):
[1] colorspace_2.1-1 rjson_0.2.23
[3] rprojroot_2.0.3 XVector_0.38.0
[5] locuszoomr_0.3.5 GenomicRanges_1.50.2
[7] base64enc_0.1-3 fs_1.6.4
[9] rstudioapi_0.14 DT_0.22
[11] ggrepel_0.9.6 bit64_4.5.2
[13] AnnotationDbi_1.60.2 fansi_1.0.6
[15] xml2_1.3.3 logging_0.10-108
[17] codetools_0.2-18 cachem_1.1.0
[19] knitr_1.48 jsonlite_1.8.9
[21] Rsamtools_2.14.0 dbplyr_2.5.0
[23] png_0.1-7 readr_2.1.5
[25] compiler_4.2.0 httr_1.4.7
[27] Matrix_1.5-3 fastmap_1.2.0
[29] lazyeval_0.2.2 cli_3.6.3
[31] later_1.3.2 htmltools_0.5.8.1
[33] prettyunits_1.2.0 tools_4.2.0
[35] gtable_0.3.5 glue_1.7.0
[37] GenomeInfoDbData_1.2.9 dplyr_1.1.4
[39] rappdirs_0.3.3 Rcpp_1.0.13
[41] Biobase_2.58.0 jquerylib_0.1.4
[43] vctrs_0.6.5 Biostrings_2.66.0
[45] rtracklayer_1.58.0 crosstalk_1.2.1
[47] xfun_0.47 stringr_1.5.1
[49] ps_1.7.1 irlba_2.3.5.1
[51] lifecycle_1.0.4 restfulr_0.0.15
[53] ensembldb_2.22.0 XML_3.99-0.14
[55] zoo_1.8-12 getPass_0.2-2
[57] zlibbioc_1.44.0 scales_1.3.0
[59] gggrid_0.2-0 hms_1.1.3
[61] promises_1.3.0 MatrixGenerics_1.10.0
[63] ProtGenerics_1.30.0 parallel_4.2.0
[65] SummarizedExperiment_1.28.0 AnnotationFilter_1.22.0
[67] LDlinkR_1.4.0 yaml_2.3.10
[69] curl_5.2.3 memoise_2.0.1
[71] ggplot2_3.5.1 sass_0.4.9
[73] biomaRt_2.54.1 stringi_1.8.4
[75] RSQLite_2.3.7 S4Vectors_0.36.2
[77] BiocIO_1.8.0 GenomicFeatures_1.50.4
[79] BiocGenerics_0.44.0 filelock_1.0.3
[81] BiocParallel_1.32.6 repr_1.1.4
[83] GenomeInfoDb_1.34.9 rlang_1.1.4
[85] pkgconfig_2.0.3 matrixStats_1.4.1
[87] bitops_1.0-8 evaluate_1.0.0
[89] lattice_0.20-45 purrr_1.0.2
[91] GenomicAlignments_1.34.1 htmlwidgets_1.6.4
[93] cowplot_1.1.3 bit_4.5.0
[95] processx_3.7.0 tidyselect_1.2.1
[97] magrittr_2.0.3 AMR_2.1.1
[99] R6_2.5.1 IRanges_2.32.0
[101] generics_0.1.3 DelayedArray_0.24.0
[103] DBI_1.2.3 pgenlibr_0.3.7
[105] pillar_1.9.0 whisker_0.4
[107] mixsqp_0.3-54 KEGGREST_1.38.0
[109] RCurl_1.98-1.16 tibble_3.2.1
[111] crayon_1.5.3 utf8_1.2.4
[113] BiocFileCache_2.6.1 plotly_4.10.4
[115] tzdb_0.4.0 rmarkdown_2.28
[117] progress_1.2.3 grid_4.2.0
[119] data.table_1.16.0 blob_1.2.4
[121] callr_3.7.2 git2r_0.30.1
[123] digest_0.6.37 tidyr_1.3.1
[125] httpuv_1.6.5 stats4_4.2.0
[127] munsell_0.5.1 viridisLite_0.4.2
[129] skimr_2.1.4 bslib_0.8.0